NeuroPlant Publications
Carreira-Rosario A, York RA, Choi M, Doe CQ, Clandinin TR. Mechanosensory input during circuit formation shapes Drosophila motor behavior through patterned spontaneous network activity. Curr Biol. 2021 Sep 1:S0960-9822(21)01126-X.
Hawkins C, Ginzburg D, Zhao K, Dwyer W, Xue B, Xu A, Rice S, Cole B, Paley S, Karp P, Rhee SY. Plant Metabolic Network 15: A resource of genome-wide metabolism databases for 126 plants and algae. J Integr Plant Biol. 2021 Aug 17.
Mann K, Deny S, Ganguli S, Clandinin TR. Coupling of activity, metabolism and behaviour across the Drosophila brain. Nature. 2021 May;593(7858):244-248.
Fechner S, D'Alessandro I, Wang L, Tower C, Tao L, Goodman MB. DEG/ENaC/ASIC channels vary in their sensitivity to anti-hypertensive and non-steroidal anti-inflammatory drugs. J Gen Physiol. 2021 Apr 5;153(4):e202012655.
Demirer GS, Silva TN, Jackson CT, Thomas JB, W Ehrhardt D, Rhee SY, Mortimer JC, Landry MP. Nanotechnology to advance CRISPR-Cas genetic engineering of plants. Nat Nanotechnol. 2021 Mar;16(3):243-250.
Kang SH, Pandey RP, Lee CM, Sim JS, Jeong JT, Choi BS, Jung M, Ginzburg D, Zhao K, Won SY, Oh TJ, Yu Y, Kim NH, Lee OR, Lee TH, Bashyal P, Kim TS, Lee WH, Hawkins C, Kim CK, Kim JS, Ahn BO, Rhee SY, Sohng JK. Genome-enabled discovery of anthraquinone biosynthesis in Senna tora. Nat Commun. 2020 Nov 18;11(1):5875.
Nekimken AL, Pruitt BL, Goodman MB. Touch-induced mechanical strain in somatosensory neurons is independent of extracellular matrix mutations in Caenorhabditis elegans. Mol Biol Cell. 2020 Jul 21;31(16):1735-1743.
Ellington C, Hayden A, LaGrange Z, Luccioni M, Osman M, Ramlan L, Vogt M, Guha S, Goodman M, O'Connell L. The plant terpenoid carvone is a chemotaxis repellent for C. elegans. MicroPubl Biol. 2020 Mar.
Yu CJ, Barry NC, Wassie AT, Sinha A, Bhattacharya A, Asano S, Zhang C, Chen F, Hobert O, Goodman MB, Haspel G, Boyden ES. Expansion microscopy of C. elegans. Elife. 2020 May 1;9:e46249.
Tsai JW, Kostyleva R, Chen PL, Rivas-Serna IM, Clandinin MT, Meinertzhagen IA, Clandinin TR. Transcriptional Feedback Links Lipid Synthesis to Synaptic Vesicle Pools in Drosophila Photoreceptors. Neuron. 2019 Feb 20;101(4):721-737.e4.
Tao L, Porto D, Li Z, Fechner S, Lee SA, Goodman MB, Xu XZS, Lu H, Shen K. Parallel Processing of Two Mechanosensory Modalities by a Single Neuron in C. elegans. Dev Cell. 2019 Dec 2;51(5):617-631.e3.
Bouain N, Korte A, Satbhai SB, Nam HI, Rhee SY, Busch W, Rouached H. Systems genomics approaches provide new insights into Arabidopsis thaliana root growth regulation under combinatorial mineral nutrient limitation. PLoS Genet. 2019 Nov 6;15(11):e1008392.
Katta S, Sanzeni A, Das A, Vergassola M, Goodman MB. Progressive recruitment of distal MEC-4 channels determines touch response strength in C. elegans. J Gen Physiol. 2019 Oct 7;151(10):1213-1230.
Banf M, Zhao K, Rhee SY. METACLUSTER-an R package for context-specific expression analysis of metabolic gene clusters. Bioinformatics. 2019 Sep 1;35(17):3178-3180.
Sanzeni A, Katta S, Petzold B, Pruitt BL, Goodman MB, Vergassola M. Somatosensory neurons integrate the geometry of skin deformation and mechanotransduction channels to shape touch sensing. Elife. 2019 Aug 13;8:e43226.
Lay A, Sheppard OH, Siefe C, McLellan CA, Mehlenbacher RD, Fischer S, Goodman MB, Dionne JA. Optically Robust and Biocompatible Mechanosensitive Upconverting Nanoparticles. ACS Cent Sci. 2019 Jul 24;5(7):1211-1222.
Goodman MB, Sengupta P. How Caenorhabditis elegans Senses Mechanical Stress, Temperature, and Other Physical Stimuli. Genetics. 2019 May;212(1):25-51.
Fechner S, Goodman MB. Synaptic Communication upon Gentle Touch. Neuron. 2018 Dec 19;100(6):1272-1274.
Wienecke CFR, Leong JCS, Clandinin TR. Linear Summation Underlies Direction Selectivity in Drosophila. Neuron. 2018 Aug 22;99(4):680-688.e4.
Yang HH, Clandinin TR. Elementary Motion Detection in Drosophila: Algorithms and Mechanisms. Annu Rev Vis Sci. 2018 Sep 15;4:143-163.
Lay A, Siefe C, Fischer S, Mehlenbacher RD, Ke F, Mao WL, Alivisatos AP, Goodman MB, Dionne JA. Bright, Mechanosensitive Upconversion with Cubic-Phase Heteroepitaxial Core-Shell Nanoparticles. Nano Lett. 2018 Jul 11;18(7):4454-4459.
Pang MM, Clandinin TR. Developmental Biology: Neurons That Divide Together Wire Together. Curr Biol. 2018 Jun 18;28(12):R715-R717.
Fehlauer H, Nekimken AL, Kim AA, Pruitt BL, Goodman MB, Krieg M. Using a Microfluidics Device for Mechanical Stimulation and High Resolution Imaging of C. elegans. J Vis Exp. 2018 Feb 19;(132):56530.
Kubanek J, Shukla P, Das A, Baccus SA, Goodman MB. Ultrasound Elicits Behavioral Responses through Mechanical Effects on Neurons and Ion Channels in a Simple Nervous System. J Neurosci. 2018 Mar 21;38(12):3081-3091.
Goodman MB, Sengupta P. The extraordinary AFD thermosensor of C. elegans. Pflugers Arch. 2018 May;470(5):839-849. Epub 2017 Dec 8.
Schläpfer P, Zhang P, Wang C, Kim T, Banf M, Chae L, Dreher K, Chavali AK, Nilo-Poyanco R, Bernard T, Kahn D, Rhee SY. Genome-wide prediction of metabolic enzymes, pathways, and gene clusters in plants. Plant Physiol. 2017;173, 2041–2059
Yang HH, St-Pierre F, Sun X, Ding X, Lin MZ, Clandinin TR. Subcellular imaging of voltage and calcium signals reveals neural processing in vivo. Cell. 2016;166:245-257.
Chae L, Kim T, Nilo-Poyango R, Rhee SY. Genomic signatures of specialized metabolism in plants. Science. 2014;344(6183):510–513.
Gohl DM, Freifeld L, Silies M, Hwa JJ, Horowitz M, Clandinin TR. Large-scale mapping of transposable element insertion sites using digital encoding of sample identity. Genetics. 2014;196:615-623.
Ramot D, Johnson BE, Berry TL Jr, Carnell L, Goodman MB. The Parallel Worm Tracker: a platform for measuring average speed and drug-induced paralysis in nematodes. PLoS One. 2008;3: e2208.
Chalasani SH, Chronis N, Tsunozaki M, Gray JM, Ramot D, Goodman MB, Bargmann CI. Dissecting a circuit for olfactory behaviour in Caenorhabditis elegans. Nature. 2007;450: 63–70.
Hawkins C, Ginzburg D, Zhao K, Dwyer W, Xue B, Xu A, Rice S, Cole B, Paley S, Karp P, Rhee SY. Plant Metabolic Network 15: A resource of genome-wide metabolism databases for 126 plants and algae. J Integr Plant Biol. 2021 Aug 17.
Mann K, Deny S, Ganguli S, Clandinin TR. Coupling of activity, metabolism and behaviour across the Drosophila brain. Nature. 2021 May;593(7858):244-248.
Fechner S, D'Alessandro I, Wang L, Tower C, Tao L, Goodman MB. DEG/ENaC/ASIC channels vary in their sensitivity to anti-hypertensive and non-steroidal anti-inflammatory drugs. J Gen Physiol. 2021 Apr 5;153(4):e202012655.
Demirer GS, Silva TN, Jackson CT, Thomas JB, W Ehrhardt D, Rhee SY, Mortimer JC, Landry MP. Nanotechnology to advance CRISPR-Cas genetic engineering of plants. Nat Nanotechnol. 2021 Mar;16(3):243-250.
Kang SH, Pandey RP, Lee CM, Sim JS, Jeong JT, Choi BS, Jung M, Ginzburg D, Zhao K, Won SY, Oh TJ, Yu Y, Kim NH, Lee OR, Lee TH, Bashyal P, Kim TS, Lee WH, Hawkins C, Kim CK, Kim JS, Ahn BO, Rhee SY, Sohng JK. Genome-enabled discovery of anthraquinone biosynthesis in Senna tora. Nat Commun. 2020 Nov 18;11(1):5875.
Nekimken AL, Pruitt BL, Goodman MB. Touch-induced mechanical strain in somatosensory neurons is independent of extracellular matrix mutations in Caenorhabditis elegans. Mol Biol Cell. 2020 Jul 21;31(16):1735-1743.
Ellington C, Hayden A, LaGrange Z, Luccioni M, Osman M, Ramlan L, Vogt M, Guha S, Goodman M, O'Connell L. The plant terpenoid carvone is a chemotaxis repellent for C. elegans. MicroPubl Biol. 2020 Mar.
Yu CJ, Barry NC, Wassie AT, Sinha A, Bhattacharya A, Asano S, Zhang C, Chen F, Hobert O, Goodman MB, Haspel G, Boyden ES. Expansion microscopy of C. elegans. Elife. 2020 May 1;9:e46249.
Tsai JW, Kostyleva R, Chen PL, Rivas-Serna IM, Clandinin MT, Meinertzhagen IA, Clandinin TR. Transcriptional Feedback Links Lipid Synthesis to Synaptic Vesicle Pools in Drosophila Photoreceptors. Neuron. 2019 Feb 20;101(4):721-737.e4.
Tao L, Porto D, Li Z, Fechner S, Lee SA, Goodman MB, Xu XZS, Lu H, Shen K. Parallel Processing of Two Mechanosensory Modalities by a Single Neuron in C. elegans. Dev Cell. 2019 Dec 2;51(5):617-631.e3.
Bouain N, Korte A, Satbhai SB, Nam HI, Rhee SY, Busch W, Rouached H. Systems genomics approaches provide new insights into Arabidopsis thaliana root growth regulation under combinatorial mineral nutrient limitation. PLoS Genet. 2019 Nov 6;15(11):e1008392.
Katta S, Sanzeni A, Das A, Vergassola M, Goodman MB. Progressive recruitment of distal MEC-4 channels determines touch response strength in C. elegans. J Gen Physiol. 2019 Oct 7;151(10):1213-1230.
Banf M, Zhao K, Rhee SY. METACLUSTER-an R package for context-specific expression analysis of metabolic gene clusters. Bioinformatics. 2019 Sep 1;35(17):3178-3180.
Sanzeni A, Katta S, Petzold B, Pruitt BL, Goodman MB, Vergassola M. Somatosensory neurons integrate the geometry of skin deformation and mechanotransduction channels to shape touch sensing. Elife. 2019 Aug 13;8:e43226.
Lay A, Sheppard OH, Siefe C, McLellan CA, Mehlenbacher RD, Fischer S, Goodman MB, Dionne JA. Optically Robust and Biocompatible Mechanosensitive Upconverting Nanoparticles. ACS Cent Sci. 2019 Jul 24;5(7):1211-1222.
Goodman MB, Sengupta P. How Caenorhabditis elegans Senses Mechanical Stress, Temperature, and Other Physical Stimuli. Genetics. 2019 May;212(1):25-51.
Fechner S, Goodman MB. Synaptic Communication upon Gentle Touch. Neuron. 2018 Dec 19;100(6):1272-1274.
Wienecke CFR, Leong JCS, Clandinin TR. Linear Summation Underlies Direction Selectivity in Drosophila. Neuron. 2018 Aug 22;99(4):680-688.e4.
Yang HH, Clandinin TR. Elementary Motion Detection in Drosophila: Algorithms and Mechanisms. Annu Rev Vis Sci. 2018 Sep 15;4:143-163.
Lay A, Siefe C, Fischer S, Mehlenbacher RD, Ke F, Mao WL, Alivisatos AP, Goodman MB, Dionne JA. Bright, Mechanosensitive Upconversion with Cubic-Phase Heteroepitaxial Core-Shell Nanoparticles. Nano Lett. 2018 Jul 11;18(7):4454-4459.
Pang MM, Clandinin TR. Developmental Biology: Neurons That Divide Together Wire Together. Curr Biol. 2018 Jun 18;28(12):R715-R717.
Fehlauer H, Nekimken AL, Kim AA, Pruitt BL, Goodman MB, Krieg M. Using a Microfluidics Device for Mechanical Stimulation and High Resolution Imaging of C. elegans. J Vis Exp. 2018 Feb 19;(132):56530.
Kubanek J, Shukla P, Das A, Baccus SA, Goodman MB. Ultrasound Elicits Behavioral Responses through Mechanical Effects on Neurons and Ion Channels in a Simple Nervous System. J Neurosci. 2018 Mar 21;38(12):3081-3091.
Goodman MB, Sengupta P. The extraordinary AFD thermosensor of C. elegans. Pflugers Arch. 2018 May;470(5):839-849. Epub 2017 Dec 8.
Schläpfer P, Zhang P, Wang C, Kim T, Banf M, Chae L, Dreher K, Chavali AK, Nilo-Poyanco R, Bernard T, Kahn D, Rhee SY. Genome-wide prediction of metabolic enzymes, pathways, and gene clusters in plants. Plant Physiol. 2017;173, 2041–2059
Yang HH, St-Pierre F, Sun X, Ding X, Lin MZ, Clandinin TR. Subcellular imaging of voltage and calcium signals reveals neural processing in vivo. Cell. 2016;166:245-257.
Chae L, Kim T, Nilo-Poyango R, Rhee SY. Genomic signatures of specialized metabolism in plants. Science. 2014;344(6183):510–513.
Gohl DM, Freifeld L, Silies M, Hwa JJ, Horowitz M, Clandinin TR. Large-scale mapping of transposable element insertion sites using digital encoding of sample identity. Genetics. 2014;196:615-623.
Ramot D, Johnson BE, Berry TL Jr, Carnell L, Goodman MB. The Parallel Worm Tracker: a platform for measuring average speed and drug-induced paralysis in nematodes. PLoS One. 2008;3: e2208.
Chalasani SH, Chronis N, Tsunozaki M, Gray JM, Ramot D, Goodman MB, Bargmann CI. Dissecting a circuit for olfactory behaviour in Caenorhabditis elegans. Nature. 2007;450: 63–70.
