Tools, protocols, and datasets that we have utilized or generated for this project are available here.
Methods: Developing a high-content, whole organism behavioral screening platform for plant based compounds
Fryer, Emily; Guha, Sujay; Rogel, Lucero; Xu, Angela; Logan-Garbisch, Theresa; Fechner, Sylvia; et al. (2020): Developing a high content, whole organism behavioral screening platform for plant based compounds. TAGC 2020. Poster. https://doi.org/10.6084/m9.figshare.12150642.v1
"ChemGPS-NP is a principal component analyses based global space for chemical global positioning system."
Larsson J, Gottfries J, Muresan S, Backlund A. J Nat Prod. 2007;70(5):789-794, and Rosén J, Lövgren A, Kogej T, Muresan S, Gottfries J, Backlund A. J Comput Aided Mol Des. 2009;23(4):253-259.
A crowd sourced, open-access database for mass spectrometry data from natural products.
Wang, Mingxun, et al. "Sharing and community curation of mass spectrometry data with Global Natural Products Social Molecular Networking." Nature Biotechnology 34.8 (2016): 828-837. PMID: 27504778
The PMN currently houses one multi-species reference database called PlantCyc and 126 species/taxon-specific databases.
Hawkins C, Ginzburg D, Zhao K, Dwyer W, Xue B, Xu A, Rice S, Cole B, Paley S, Karp P, Rhee SY. Plant Metabolic Network 15: A resource of genome-wide metabolism databases for 126 plants and algae. J Integr Plant Biol. 2021 Aug 17.